9thAnnual Meeting of Proteomics Society, India (PSI)
International Conference on Proteomics in Health and Disease

Institute of Life Sciences (ILS), Bhubaneswar
November 30 - December 02, 2017

Scientific Program

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Education Day Program
“Proteomics and Its Applications for Biological Research”
Education Day: Wednesday, 29th November 2017
Title of the Talk and Speaker Name
08.00 AM to 09.15 AM   Registration
09.15 AM to 09.30 AM   Inauguration & Welcome
1. Dr. SurekhaZingde, Ex-President, PSI
2. Dr. Srikanth Rapole, NCCS, Pune
Session I: Technology  

Session Chairs
1. Dr. B. P. Shaw, ILS, Bhubaneswar
2. Dr. A. Sonawane, KIIT-Biotech, Bhubaneswar

09.30 AM to 10.00 AM EL-01
Why and How of Proteomics for Biological Research
Dr. SurekhaZingde, Ex-President, PSI
10.00 AM to 10.30 AM EL-02: Mass Spectrometry based Quantitative Proteomics
Dr. Srikanth Rapole, NCCS, Pune
10.30 AM to 11.00 AM EL-03: Understanding False Discovery Rate estimation in shotgun proteomics
Dr.Debasis Dash, IGIB, New Delhi
11.00 AM to 11.15 AM Break High-Tea
11.15 AM to 11.45 PM EL-04: Role of Chromatography in proteomic studies
Dr. M. A. Vijayalakshmi, VIT, Vellore
11.45 AM to 12.15 PM EL-05: Targeted quantification of post translationally modified peptides
Dr. Mahesh Kulkarni, NCL, Pune
12.15 PM to 12.45 PM EL-06: Gel based Quantitative Proteomics,
Dr. Abhijit Chakrabarti, SINP, Kolkata
12.45 PM to 01.00 PM   Questions and Answers session
01.00 PM to 02.00 PM Break Group photo & Lunch
Session II: Applications   Session Chairs
1. Dr.J. Dandapat, Utkal University, Bhubaneswar
2.Dr. Abhijit Chakrabarti, SINP, Kolkata
02.00 PM to 02.30 PM EL-07 Statistics and Machine Learning Methods for Proteomics and Proteogenomics
Dr. D. R. Mani, Broad Institute, USA
02.30 PM to 03.00 PM EL-08 Proteomic Window for Insights into the Oddities of "Reproduction"
Dr. GeetanjaliSachdeva, NIRRH, Mumbai
03.00 PM to 03.30 PM EL-09 Proteomics in Dairy and Animal Science Research
Dr. Ashok Mohanty, NDRI, Karnal
03.30 PM to 04.30 PM
  Proteomics facility visit
Dr. Amol R. Suryawanshi, co-ordinator
03.45 PM to 04.15 PM Break High-Tea
04.30 PM to 05.00 PM EL-10 Proteome to Interactome: Understanding Nutrient-Response in Plant
Dr.Subhra Chakraborty, NIPGR, New Delhi
05.00 PM to 05.30 PM EL-11 Discover the finer facets of Functional Proteomics using Protein Microarrays and Surface Plasmon Resonance
Dr.Sanjeeva Srivastava, IITB, Mumbai
05.30 PM to 06.00 PM   Feedback and Concluding remarks

Conference Scientific Program
Day 1: Thursday 30th November 2017
Time   Title of the Talkand Speaker Name / Details
08.00 AM to 09.00 AM   Registration
09.00 AM to 09.10 AM   Welcome address
Plenary& Keynote Session 1    
  Session Chair 1. Dr. Ajay Parida, Director, ILS, Bhubaneswar
2. Dr.UtpalTatu, President, PSI&IISc, Bangalore
09.10 AM to 09.50 AM PL-01: Discovery Proteomics may not translate easily to Clinical Proteomics
Dr.M. Radhakrishna Pillai, RGCB, Thiruvananthapuram
09.50 AM to 10.30 AM PL-02: Molecular Analysis of Glioblastoma : The Continuing Tale
Dr. Ravi Sirdeshmukh, IOB, Bangalore
10.30 AM to 10.50 AM KN-01: Proteomic profiling of plasma membrane in chickpea reveals a novel negative regulator of dehydration tolerance
Dr.Niranjan Chakraborty, NIPGR, New Delhi
10.50 AMto 11.10 AM KN-02: Addressing vitamin B12 deficiency- Need of the hour
Dr. Shantanu Sengupta, CSIR-IGIB, New Delhi
11.10 AM to 11.30 AM Break Group Photo
Exhibition & High Tea
11.30 AM to 12.30 PM   Inauguration
Session 1: Global and Targeted proteomics
  Session Chair 1.Dr. Shantanu Sengupta, CSIR-IGIB, New Delhi
2.Dr.Niranjan Chakraborty, NIPGR, New Delhi
12.30 PM to 12.50 PM KN-03: Endometrial Secretome and Its Modulation: From "Function" to "Dysfunction"
Dr.GitanjaliSachdeva, ICMR-NIRRH, Mumbai
12.50 PM to 01.10 PM KN-04: Proteome-wide effect of silencing of Milk Fat Globule Membrane Epithelial Growth Factor 8 (MFGE8) on lactocytes
Dr. Ashok K. Mohanty, ICAR-NDRI, Karnal
01.10 PM to 03.00 PM Break Lunch and Poster session I
03.00 PM to 03.15 PM IL-01: Applications of proteomics in plant biology: with special reference to abiotic stress
Dr.Giridara-Kumar Surabhi, RPRC, Bhubaneswar
03.15 PM to 03.30 PM IL-02: Proteomics in vaccine development against parasitic infections Dr.JyotirmayaMohanty, ICAR-CIFA, Bhubaneswar
03.30 PM to 03.45 PM IL-03: Defect in translation initiation fidelity alters differential protein expression pattern and cellular physiology in Saccharomyces cerevisiae
Dr. Pankaj Alone, NISER, Bhubaneswar
03.45 PM to 03.55 PM O-01: Development of a LC-MS based method for typing of A1/A2 milk and their comparative proteome analysis using TMT based quantitation approach
Mr. Shivam Kumar Dubey, ICAR-NDRI, Karnal
03.55 PM to 04.05 PM O-02: Differentially expressed proteins in hepatopancreas of freshwater prawn, Macrobrachiumrosenbergii After Vibrio harveyichallenge
Mr. Mohan R. Badhe, ICAR-CIFA, Bhubaneswar
04.05 PM to 04.20 PM Break Exhibition & High Tea
Session 2: Disease proteomics & Biomarker Discovery
  Session Chair 1. Dr.SurekhaZingde, Ex-President, PSI
2. Dr.SanghamitraPati, RMRC, Bhubaneswar
04.20 PM to 04.40 PM KN-05: Heat shock protein 40 as a knob chaperone in Plasmodium falciparum infected human erythrocytes
Dr.UtpalTatu, IISc, Bangalore
04.40 PM to 05.00 PM KN-06: Plasma proteomics in Coronary Artery Disease
Dr.ArunBandyopadhyay, CSIR-IICB, Kolkata
05.00 PM to 05.15 PM IL-04: Proteomics and functional analysis of outer membrane vesicles of bacteria
Dr. M V Jagannadham, CSIR-CCMB, Hyderabad
05.15 PM to 05.30 PM IL-05: Saliva as a diagnostic fluid: Are we there yet?
Dr. Kiran S. Ambatipudi, IIT, Rurkee
05.30 PM to 05.45 PM IL-06: Application of Quantitative high throughput Proteomics in health and disease
Dr. Suman S. Thakur, CSIR-CCMB, Hyderabad
05.45 PM to 05.55 PM O-03: Multipronged proteomic analysis of multiple myeloma towards new targets and biomarkers
Mr. ChanukuppaVenkatesh, NCCS, Pune
05.55 PM to 06.05 PM O-04: Identification of estrus associated proteins in saliva of water buffalo (Bubalusbubalis) using high throughput Mass Spectrometry
Ms. RubinaKumariBaithalu, ICAR-NDRI, Karnal
Plenary Session 2    
  Session Chair 1.Dr. Abhijit Chakrabarti, SINP, Kolkata
06.05 PM to 06.45 PM PL-03: Novel insight to the causal link between insulin signaling deregulation and its potential etiology of aggressive prostate cancer: Implications to the development of novel biomarkers and treatment targets
Dr. Spiros D. Garbis, University of Southampton, UK
06.45 PM to 07.45 PM   PSI GB meeting at ILS Auditorium
07.45 PM to 10.00 PM   Banquet Dinner at Bhubaneswar Golf Club, Infocity, Bhubaneswar
Day 2: Friday 1st December 2017
Time   Title of the Talk and Speaker Name
Plenary Session 3 Session Chair Dr. M. A. Vijayalakshmi, VIT, Vellore
09.00 AM to 09.40 AM PL-04: Proteogenomic Analysis of Breast Cancer
Dr. D. R. Mani, Broad Institute, USA
Session 3:Proteogenomics and Big Data Analysis
  Session Chair 1. Dr. Ravi Sirdeshmukh, IOB, Bangalore
2.Dr.Sanjeeva Srivastava, IIT, Mumbai
09.40 AM to 10.00 AM KN-07: An integrative proteogenomics approach to unravel human proteoforms
Dr.Debasis Dash, CSIR-IGIB, New Delhi
10.00 AM to 10.20 AM IL-07: Reverse Phase Protein Array (RPPA) for integrating cancer genomics and proteomics data to unwire lung cancer relevant signaling and drug resistance mechanisms
Dr. Ramesh Ummanni, CSIR-IICT, Hyderabad
10.20 AM to 10.30 AM O-05: A comprehensive proteome map of Pashmina fibre by combining multiple protein extraction methods and proteogenomics approach
Ms.SakshiKaith, ICAR-NDRI, Karnal
10.30 AM to 10.40 AM O-06: Data exploration and in-silico analysis of human proteome for development of web-based targeted proteomics framework
Ms. Manika Singh,Institute of bioinformatics, Bangalore
10.40 AM to 11.00 AM Break Exhibition & High Tea
Session 4: Metabolomics and Integration of omics
  Session Chair 1.Dr.Subhra Chakraborty, NIPGR, New Delhi
2.Dr.Akhilesh Pandey, Johns Hopkins University, USA
11.00 AM to 11.20 AM KN-08: Integrative multiomics analysis of vivax malaria
Dr.Sanjeeva Srivastava, IIT, Mumbai
11.20 AM to 11.40 AM KN-09: Integrated omics implied the endogenous protease inhibitors influence protease gene expression in Helicoverpaarmigera
Dr. Ashok Giri, CSIR-NCL, Pune
11.40 AM to 12.00 PM KN-10: Proteomic and metabolomic profiling towards candidate markers for Breast cancer
Dr. Srikanth Rapole, NCCS, Pune
12.00 PM to 12.15 PM IL-08: Asthma-COPD overlap syndrome (ACOS) - a new disease or a variant of asthma or COPD? A (1H)-NMR based metabolomics study
Dr.Koel Chaudhary, IITK, Kharagpur
12.15 PM to 12.30 PM CL-01: Integrated Biology Approach for comprehensive understanding of Biological systems: Tools and challenges
Dr. Saurabh Nagpal, Agilent Technologies, Manesar
12.30 PM to 12.45 PM CL-02: SWATH acquisition: A robust methodology to address various biological questions
Dr.DipankarMalakar, Sciex, Gurgaon
12.45 PM to 12.55 PM O-07:

Integrated proteomic and miRNA profiling analyses in oral keratinocytes in response to cigarette smoke
Mr.Mohd Younis Bhat, Institute of bioinformatics, Bangalore

12.55 PM to 01.05 PM O-08: Plant responses and global significance: Elevated CO2 and temperature effects on Picrorhizakurroa
Dr.Rajiv Kumar, CSIR-IHBT,Palampur
01.05 PM to 03.00 PM Break Lunch and Poster session II
Session 5: Post-translational modifications (PTMs)
  Session Chair 1.Dr. Stephan Pennington, UCD Conway Institute, Ireland
2.Dr. Srikanth Rapole, NCCS, Pune
03.00 PM to 03.20 PM KN-12: Abundance and glycation status of albumin determines hemoglobin glycation
Dr. Mahesh Kulkarni, CSIR-NCL, Pune
03.20 PM to 03.40 PM CL-03: The timsTOF Pro with PASEF: Digging deeper into the proteome with record-breaking speed, sensitivity and robustness.
Dr. Lucy Ann Woods, Bruker Daltonik GmbH, Germany
03.40 PM to 03.50 PM O-09: Complexity and diversity of mucin-type O-glycosylation of CD43 revealed by electron transfer dissociation mass spectrometry
Ms. VanditaDwivedi, NII, New Delhi
03.50 PM to 04.00 PM O-10: Phospho T693 EGFR: a prognostic marker of recurrent non-functioning pituitary adenoma
Mr. Ashutosh Rai, PGIMER, Chandigarh
04.00 PM to 04.15 PM Break Exhibition & High Tea
Session 5: Human Proteome Project-CHPP/B-DHPP
  Co-ordinator: 1. Dr. Ravi Sirdeshmukh, IOB, Bangalore
04.15 PM to 06.00 PM PD-1: Panel Discussion: HPP: Missing proteins and beyond
Panel List:
    Dr. Ravi Sirdeshmukh, IOB, Bangalore
Dr. Gil Omenn,University of Michigan, USA
Dr.Sanjeeva Srivastava, IIT, Mumbai
Dr. Sanjeev Shukla, IISER, Bhopal
Dr. Srikanth Rapole, NCCS, Pune
Dr. Mahesh Kulkarni, CSIR-NCL, Pune
Dr.Debasis Dash, CSIR-IGIB, New Delhi
Plenary Session 4 Session Chair Dr. D. R. Mani, Broad Institute, USA
06.00 PM to 06.40 PM PL-5: Proteomics for Patients 'From protein biomarker discovery to the development of diagnostic tests'
Dr. Stephan Pennington, UCD Conway Institute, Ireland
07.30 PM to 08.30 PM   Cultural Program

08.30 PM to 10.00 PM
Day 3: Saturday 2nd December 2017
  Title of the Talk and Speaker Name
Plenary Session 5    
  Session Chair

Dr.UtpalTatu, President, PSI &IISc, Bengaluru

09.00 AM to 09.40 AM PL-6: Dissecting interactomes using proximity-dependent biotinylation
Dr.Akhilesh Pandey, Johns Hopkins University, USA
Session 7: Interaction proteomics & protein networks
  Session Chair 1. Dr. PalokAich, NISER, Bhubaneswar
2.Dr. D. V. Singh, ILS, Bhubaneswa
09.40 AM to 10.00 AM KN-13: Structural Investigation of Plant Seed Proteome
Dr.Dinakar M. Salunke, ICGEB, New Delhi
10.00 AM to 10.20 AM KN-14:

Integrative Omics and Biomolecular Network Analysis Dissect Host-Specific Immune Dynamics in Fusarium disease
Dr.Subhra Chakraborty, NIPGR, New Delhi

10.20 AM to 10.40 AM KN-15: Identifying Protein Networks to evade High Altitude Illnesses: A Proteomics Approach
Dr.Kalpana Bhargava, DIPAS, Delhi
10.40 AM to 11.00 AM Break Exhibition & High Tea
11.00 AM to 11.15 AM IL-09: To understand the role of Mycobacteria glyconetwork in tuberculosis
Dr.AvinashSonawane, KIIT, Bhubaneswar
11.15 AM to 11.30 AM
IL-10: Suppression of apoa1 2b in arsenic exposed carp Labeorohita indicates efficacy of curcumin against arsenicosis
Dr.Bimal P. Mohanty, ICAR-CIFRI, Kolkata
11.30 AM to 11.45 AM IL-11: Oncogenic splicing switch and glucose metabolism in breast cancer
Dr.Sanjeev Shukla, IISER, Bhopal
11.45 AM to 11.55 AM O-11: Dehydration induced mitochondrial defence response by catabolism of reactive oxygen species in rice
Dr. Dipak Gayen, NIPGR, New Delhi
12.00 PM to 01.00 PM   Valedictory function
01.00 PM to 02.30 PM Break Lunch
PSI-2017 Poster

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